Sustainable and organic plant production uses natural products and natural self-regulation processes occurring in the ecosystem. The awareness is growing and the demands of consumers are higher and higher. One solution is to use various methods, as an alternative to pesticides. It is also very important to care for the stored crops after harvesting especially using non-chemical methods. The physical method of plant protection consists in treating the harmful organism with physical factors such as temperature, its same light and radiation, controlled atmosphere, special packaging, pressure, various sounds, ozone, and low-temperature plasma. The availability of effective application techniques opens up new possibilities for the storage of crops in order to maintain their health and quality for a long time. This review focuses on the analysis of physical methods of postharvest protection, especially the latest methods using ozone and low-temperature plasma. As a result, consumers of agricultural crops will be able to consume food free of insects, mycotoxins and pesticide residues.