The plants cultivated in loamy sand contained less iron, manganese, copper, cobalt, nickel, and zinc while containing more chromium, lead, and cadmium than in sand. This study was launched to use organic materials in the form of humic acids (HA) to reduce the potential negative effects of excessive nitrogen fertiliser (ammonium nitrate, urea, and urea and ammonium nitrate solution—UAN) application rates (160 mg N kg−1 soil) on the trace element contents in maize in two soils differing in granulometric composition. HA were applied into the soil three times during the maize vegetation: before the sowing, at the five-leaf unfolded stage, and at the intensive shoot growth stage. The HA doses amounted to 0, 0.05, 0.10, and 0.15 g kg−1 soil. Urea fertilisation increased the cadmium, lead, chromium, and nickel contents and reduced the iron content in maize on both soils. UAN contributed to an increased chromium content being higher than that caused by urea and to reduced iron content in the aboveground parts of maize, as compared to the objects with ammonium nitrate. In the series with ammonium nitrate, the highest dose of HA reduced the manganese, zinc, iron, and cobalt contents in maize on both soils. In the series with urea, however, their reducing effect on the copper and iron contents in maize on both soils was noted. The study also demonstrated a positive reduction in the contents of many other trace elements in maize under the influence of the application of HA (particularly, their highest dose). However, it only concerned one of the soils under study. The application of HA into the soil can be effective in reducing the trace element content in plants and can mitigate the adverse environmental impact of intensive agricultural production.